Training resources list

This page displays all training resources mentioned across the Infectious Diseases Toolkit.

Name	Related page	Registry
Master of Biomedical Sciences: Infectious and Tropical Diseases	Belgium	Other
Valentine Vaccine Symposium - University of Antwerp	Belgium	Other
SIMID Annual Course - University of Antwerp	Belgium	Other
Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data	An automated SARS-CoV-2 genome surveillance system built around Galaxy	TeSS
Automating Galaxy workflows using the command line	An automated SARS-CoV-2 genome surveillance system built around Galaxy	TeSS
Screencast of the Galaxy ENA upload tool	Using the ENA data submission toolbox for SARS-CoV-2 data	YouTube
FAIR data and provenance with RO-Crate and Galaxy	Human clinical and health data
Data visualisation	Data communication	Zenodo
European Nucleotide Archive Quick tour by EMBL-EBI	SARS-CoV-2 sequencing in Estonia 2021-2022	TeSS
Workshops on delivering FAIR metadata for COVID-19 data portal	Netherlands	Health-RI
European Nucleotide Archive - Quick Tour	Pathogen characterisation
SARS-CoV-2 data submission to the European Nucleotide Archive	Pathogen characterisation
SARS-CoV-2 data analysis	Pathogen characterisation	Carpentries
SARS-CoV-2, viruses and bacteria data analysis	Pathogen characterisation	Carpentries
Learn about DAGs and DAGitty	Prototyping federated causal research questions reusing sensitive health data	Other
BY-COVID Spring 23 Use Cases Workshop: Integration of socioeconomic data in observational studies on vaccine effectiveness	Prototyping federated causal research questions reusing sensitive health data	Zenodo
The Mathematics and Statistics of Infectious Disease Outbreaks	Sweden	GitHub
Master of Science in Epidemiology	Switzerland
Infectious Diseases Training Sites in Switzerland	Switzerland
Infectious Diseases Training Sites in Switzerland	Switzerland
Swiss Tropical and Public Health Institute	Switzerland