Skip to content Skip to footer

Tools and resources list

Skip tool table

Tool or resource Description Related pages Registry
Galaxy Open, web-based platform for data intensive biomedical research. Whether on the free public server or your own instance, you can perform, reproduce, and share complete analyses. Provenance An automated SARS-CoV-2 genome surveillance system built around Galaxy Tool info Training
Common Workflow Language (CWL) An open standard for describing workflows that are build from command line tools Provenance Standards/Databases Training
Snakemake Snakemake is a framework for data analysis workflow execution Provenance Tool info Training
StreamFlow Container-native workflow manager for hybrid infrastructures Provenance
Sapporo WES Implementation of Workflow Execution Service (WES) or so-called Workflow-as-a-Service. Provenance Tool info
COMPSs COMP Superscalar (COMPSs) is a task-based programming model which aims to ease the development of applications for distributed infrastructures, such as large High-Performance clusters (HPC), clouds and container managed clusters. Provenance Tool info
R Shiny Shiny is an R package that makes it easy to build interactive web apps straight from R. Training
R Markdown R Markdown can help to turn your analyses into high quality documents, reports, presentations and dashboards. Training
LimeSurvey LimeSurvey is a free and open source advanced online survey system to create online surveys.
DMP Online DMP online is an online planning tool to help you write an effective DMP based on an institutional or funder template. Training
WorkflowHub A registry for describing, sharing and publishing scientific computational workflows. An automated SARS-CoV-2 genome surveillance system built around Galaxy Tool info Standards/Databases Training
CRG COVID-19 Viral Beacon A platform allowing for browsing SARS-CoV-2 variability at the genome, amino acid, structural, and motif levels An automated SARS-CoV-2 genome surveillance system built around Galaxy
Galaxy Europe The European Galaxy server. Provides access to thousands of tools for scalable and reproducible analysis. An automated SARS-CoV-2 genome surveillance system built around Galaxy
European Nucleotide Archive (ENA) Provides a record of the nucleotide sequencing information. It includes raw sequencing data, sequence assembly information and functional annotation. An automated SARS-CoV-2 genome surveillance system built around Galaxy Tool info Standards/Databases Training
UCSC Genome Browser An online tool for analyzing and visualizing genomic data. It allows users to add and share annotations. An automated SARS-CoV-2 genome surveillance system built around Galaxy Tool info Standards/Databases
COVID-19 & Pandemic Preparedness Data Portal Sweden

The Swedish COVID-19 & Pandemic Preparedness Data Portal is a hub for data, tools, services, and other resources centred around COVID-19 and pandemic preparedness in Sweden.