Attributing credit
| title | page_id | description | url |
|---|
Data analysis
| title | page_id | description | url |
|---|---|---|---|
| Human biomolecular data | hbd_data_analysis | Analysing Human biomolecular related data. | /data-analysis/human-biomolecular-data |
Data communication
| title | page_id | description | url |
|---|
Data description
| title | page_id | description | url |
|---|---|---|---|
| Pathogen characterisation | pc_data_description | Finding (meta)data standards and documentation. | /data-description/pathogen-characterisation |
Data sources
| title | page_id | description | url |
|---|---|---|---|
| Human biomolecular data | hbd_data_sources | Finding and sharing data for human biomolecular related data sources. | /data-sources/human-biomolecular-data |
| Human clinical and health data | hchd_data_sources | Finding and sharing data from human clinical and health data related data sources. | /data-sources/human-clinical-and-health-data |
| Socioeconomic data | sed_data_sources | Finding and sharing data for socioeconomic related data sources. | /data-sources/socioeconomic-data |
Ethical Legal and Social Issues
| title | page_id | description | url |
|---|
Provenance
| title | page_id | description | url |
|---|---|---|---|
| Human clinical and health data | hchd_provenance | Tracking data and analysis steps. | /provenance/human-clinical-and-health-data |
Quality control
| title | page_id | description | url |
|---|---|---|---|
| Pathogen characterisation | pc_quality_control | General considerations for pathogen characterization quality control. | /quality-control/pathogen-characterisation |
Showcase
| title | page_id | description | url |
|---|---|---|---|
| An automated SARS-CoV-2 genome surveillance system built around Galaxy | covid19_galaxy_project | An automated, modular system for large-scale FAIR analysis of SARS-CoV-2 sequencing data analysis powered by the Galaxy platform. | /showcase/covid19-galaxy |
| SARS-CoV-2 sequencing in Estonia 2021-2022 | korogenoest | Full-genomic sequencing and analysis of SARS-CoV-2 strains in Estonia during 2021-2022. | /showcase/korogenoest |
| Linked pathogen and host data across archives - a multi-omics, SARS-CoV-2 cohort case study | linked_cohort_data | Here we describe the first example of linking and sharing a COVID-19, multi-omics cohort data set via the EMBL-EBI infrastructure. | /showcase/linked-cohort-data |
| Prototyping federated causal research questions reusing sensitive health data | prototyping_research_questions | Methodological framework for causal federated research based on real-world observational data sources across national borders | /showcase/prototyping-research-questions |
| The Swedish Pathogens Portal | swedish_pathogens_portal | A web portal that provides information about available datasets, resources, tools, and services related to pandemic preparedness in Sweden. We offer support to all those involved in pandemic preparedness research that are affiliated with a Swedish research institution or university. | /showcase/swedish-pathogens-portal |
National resources
| title | page_id | description | url |
|---|